immunology topic
awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
immunarch
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
covid19-review
A collaborative review of the emerging COVID-19 literature. Join the chat here:
mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
vdjtools
Post-analysis of immune repertoire sequencing data
vdjdb-db
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
antigen.garnish
stitchr
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
immunedb
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data