qiime2 topic

List qiime2 repositories

ampliseq

157
Stars
105
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Amplicon sequencing analysis workflow using DADA2 and QIIME2

verified publisher icon nf-core

empress

45
Stars
31
Forks
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A fast and scalable phylogenetic tree viewer for microbiome data analysis

verified publisher icon biocore

gemelli

66
Stars
17
Forks
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Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse...

verified publisher icon biocore

isb_course_2022

23
Stars
9
Forks
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Materials and presentation for the 2022 ISB Microbiome course.

verified publisher icon Gibbons-Lab

isb_course_2023

17
Stars
9
Forks
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Materials and presentation for the 2023 ISB Microbiome course.

verified publisher icon Gibbons-Lab

MicrobiomeStat

24
Stars
3
Forks
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Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

verified publisher icon cafferychen777

dokdo

40
Stars
12
Forks
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A Python package for microbiome sequencing analysis with QIIME 2

verified publisher icon sbslee