biocore

icon indicating a website link http://biocore.github.io/

icon location Cyberspace icon location Collaboratively developed bioinformatics software.

Results 23 repositories owned by biocore

qiime

284
Stars
269
Forks
Watchers

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

verified publisher icon biocore

emperor

52
Stars
50
Forks
Watchers

Emperor a tool for the analysis and visualization of large microbial ecology datasets

verified publisher icon biocore

American-Gut

98
Stars
79
Forks
Watchers

American Gut open-access data and IPython notebooks

verified publisher icon biocore

biom-format

72
Stars
90
Forks
Watchers

The Biological Observation Matrix (BIOM) Format Project

verified publisher icon biocore

calour

26
Stars
22
Forks
Watchers

exploratory and interactive microbiome analyses based on heatmaps

verified publisher icon biocore

deblur

78
Stars
40
Forks
Watchers

Deblur is a greedy deconvolution algorithm based on known read error profiles.

verified publisher icon biocore

DEICODE

30
Stars
17
Forks
Watchers

Robust Aitchison PCA from sparse count data

verified publisher icon biocore

emp

136
Stars
71
Forks
Watchers

Code repository of the Earth Microbiome Project.

verified publisher icon biocore

empress

45
Stars
31
Forks
Watchers

A fast and scalable phylogenetic tree viewer for microbiome data analysis

verified publisher icon biocore

gemelli

66
Stars
17
Forks
Watchers

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse...

verified publisher icon biocore