microbial-ecology topic
List
microbial-ecology repositories
metaGEM
173
Stars
37
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:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
MicEco
40
Stars
11
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Various functions for analysis of microbial community data
ghost-tree
27
Stars
19
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creating hybrid-gene phylogenetic trees for diversity analyses
iroki
28
Stars
1
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Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.
ampvis2
65
Stars
23
Forks
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Tools for visualising microbial community amplicon data
isb_course_2022
23
Stars
9
Forks
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Materials and presentation for the 2022 ISB Microbiome course.
isb_course_2023
17
Stars
9
Forks
Watchers
Materials and presentation for the 2023 ISB Microbiome course.