microbial-ecology topic
metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
MicEco
Various functions for analysis of microbial community data
ghost-tree
creating hybrid-gene phylogenetic trees for diversity analyses
iroki
Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.
ampvis2
Tools for visualising microbial community amplicon data
isb_course_2022
Materials and presentation for the 2022 ISB Microbiome course.
isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.