k-mer topic
charcoal
Remove contaminated contigs from genomes using k-mers and taxonomies.
kmermaid
k-mer similarity analysis pipeline
seer
sequence element (kmer) enrichment analysis
krust
Bioinformatics 101 tool for counting unique k-length substrings in DNA
ska.rust
Split k-mer analysis – version 2
Metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
seqR
fast and comprehensive k-mer counting package
iMOKA
interactive Multi Objective K-mer Analysis
VirStrain
An RNA virus strain-level identification tool for short reads.
skc
Shared k-mer content between two genomes