gene-sets topic

List gene-sets repositories

ssGSEA2.0

225
Stars
76
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Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

liger

55
Stars
11
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Lightweight Iterative Gene set Enrichment in R

BioBombe

63
Stars
23
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BioBombe: Sequentially compressed gene expression features enhances biological signatures

msigdbr

65
Stars
12
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MSigDB gene sets for multiple organisms in a tidy data format

myTAI

39
Stars
16
Forks
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Evolutionary Transcriptomics with R

snpsea

35
Stars
9
Forks
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:bar_chart: Identify cell types and pathways affected by genetic risk loci.

enrichment_analysis

19
Stars
0
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A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.