biomedical-data-science topic

List biomedical-data-science repositories

UNet-Zoo

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A collection of UNet and hybrid architectures in PyTorch for 2D and 3D Biomedical Image segmentation

CompBioDatasetsForMachineLearning

141
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23
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A Curated List of Computational Biology Datasets Suitable for Machine Learning

S3M

52
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8
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A software package for statistically significant shapelet mining

PubMed-Best-Match

38
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11
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Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches

GradingKneeOA

31
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17
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Knee Osteoarthritis Analysis with X-ray Images using CNN

im2im-uq

44
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8
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Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

atacseq_pipeline

32
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2
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Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using...

Public-datasets-of-BCI

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Popular public datasets of BCI