biomedical-data-science topic
UNet-Zoo
A collection of UNet and hybrid architectures in PyTorch for 2D and 3D Biomedical Image segmentation
CompBioDatasetsForMachineLearning
A Curated List of Computational Biology Datasets Suitable for Machine Learning
S3M
A software package for statistically significant shapelet mining
PubMed-Best-Match
Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches
GradingKneeOA
Knee Osteoarthritis Analysis with X-ray Images using CNN
im2im-uq
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
adversarial-relation-classification
Unsupervised domain adaptation method for relation extraction
atacseq_pipeline
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using...
OCT-Retinal-Layer-Segmenter
UNet based model that segment retina to 8 layers in OCT images
Public-datasets-of-BCI
Popular public datasets of BCI