Computational Epigenetics
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Computational Epigenetics
atacseq_pipeline
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Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using...
open_pipelines
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Pipelines for NGS data preprocessing by the Bock lab and friends
crop-seq
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Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
unsupervised_analysis
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A general purpose Snakemake workflow to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.
enrichment_analysis
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A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.