pathway-enrichment-analysis topic
List
pathway-enrichment-analysis repositories
pathfindR
169
Stars
25
Forks
Watchers
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
ssGSEA2.0
225
Stars
76
Forks
Watchers
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
GSVA
168
Stars
40
Forks
Watchers
Gene set variation analysis
liger
55
Stars
11
Forks
Watchers
Lightweight Iterative Gene set Enrichment in R
oncoEnrichR
49
Stars
10
Forks
Watchers
Explore the cancer relevance of your gene list
CARNIVAL
55
Stars
29
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CAusal Reasoning for Network Identification with integer VALue programming in R
ReactomePy
21
Stars
4
Forks
Watchers
Explore biomolecular pathways in Reactome from the command-line or a Python script
Enrichment-Analysis
28
Stars
14
Forks
Watchers
From RNA-seq raw reads to enriched pathways by DEGs