Systems and Synthetic Biology at Chalmers University of Technology

Results 6 repositories owned by Systems and Synthetic Biology at Chalmers University of Technology

yeast-GEM

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The consensus GEM for Saccharomyces cerevisiae

RAVEN

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The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Human-GEM

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The generic genome-scale metabolic model of Homo sapiens

DLKcat

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Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

GECKO

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Toolbox for including enzyme constraints on a genome-scale model.

HGTphyloDetect

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HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.