cancer-genomics topic

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

dellytools

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

brentp

Lollipop-style mutation diagrams for annotating genetic variations.

joiningdata

An ensemble approach to accurately detect somatic mutations using SomaticSeq

bioinform

Microassembly based somatic variant caller for NGS data

nygenome

REVOLVER - Repeated Evolution in Cancer

caravagnalab

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

FunGeST

SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file)....

AlexandrovLab

React Frontend of cBioPortal :tada:

cBioPortal

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

rhshah