bioinformatics-pipeline topic

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

vanheeringen-lab

GCP for Bioinformatics Researchers

lynnlangit

Package for fetching metadata and downloading data from SRA/ENA/GEO

saketkc

A collection of reusable WDL tasks. Category:Other

biowdl

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available fro...

nsalomonis

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

cbg-ethz

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

urmi-21

Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.

JetBrains-Research

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

MaayanLab

A modular annotation tool for genomic variants

KarchinLab