ncbi-sra topic

List ncbi-sra repositories

pysradb

297
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49
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Package for fetching metadata and downloading data from SRA/ENA/GEO

grabseqs

104
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16
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A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

pyrpipe

78
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27
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Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

r2g

48
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2
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A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

modulome-workflow

15
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18
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Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA

seqsender

32
Stars
10
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Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories