seqan3
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seqan
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
This PR builds upon the original proposal of @marehr (#3227). I changed from the `print` static member function to overloading the function call operator of the printer classes. Using this...
## Platform - SeqAn version: 3.3.0 - Operating system: Darwin MacBook-Pro-2.local 23.1.0 Darwin Kernel Version 23.1.0: Mon Oct 9 21:33:00 PDT 2023; root:xnu-10002.41.9~7/RELEASE_ARM64_T6031 arm64 - Compiler: ## Question I have...
https://github.com/seqan/seqan3/pull/3256#discussion_r1632766925 We should store vectors of tags instead of the raw string.
Is it possible to score sequences that have been pre-aligned? Something like ```seqan3::align_cfg::method_in_place{} | seqan3::align_cfg::scoring_scheme{seqan3::hamming_scoring_scheme{}}```
Example usage: ```cpp seqan3::sequence_file_output fout{"/tmp/test.sam", seqan3::fields{}, std::ios_base::app}; ``` * It's annoying, but acceptable, that the fields have to be given. Old Example usage: ```cpp seqan3::sequence_file_output fout{"/tmp/test.sam", seqan3::fields{}, {.append = true}};...
## Platform - SeqAn version: 3.4.0 - Operating system: Linux - Compiler: g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 ## Question Hi, Is it possible to compute sequence alignments suing alphabets larger than...
- [x] Update copyright year. #3327 - [x] Create at least one pre-release s.t. our package maintainers can try out a new release of our library. ([Instructions](#prerelease)) - [x] Check...