seqan3
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seqan
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
### Does this problem persist on the current master? - [X] I have verified the issue on the current master ### Is there an existing issue for this? - [X]...
## Platform - SeqAn version: 3.0 - Operating system: `Linux kaya 5.17.9-arch1-1 #1 SMP PREEMPT Wed, 18 May 2022 17:30:11 +0000 x86_64 GNU/Linux` - Compiler: `gcc (GCC) 12.1.0` ## Question...
- [x] A short sentence to describe what Configuration does on the Alignment overview in API references (modules) - [x] Write detailed landing page for alignment - [x] Write detailed...
I think the kmer hash view does not work with views, which have shapes in the form 1101 or 1011. ```cpp #include #include #include int main() { using namespace seqan3::literals;...
### Description `seqan3::concatenated_sequences` is a container that is supposed to be more efficient when using "static" input data (many read operations, few to no write operations) In contrast to a...
## Question I've been poring over the documentation and I'm still can't work out if I can use the FM-index API for string graph construction (in a similar manner to...
## Platform - SeqAn version: master (3.0.0-1571-g96216a19) - Operating system: Linux AlAnfa 5.7.7-arch1-1 #1 SMP PREEMPT Wed, 01 Jul 2020 14:53:16 +0000 x86_64 GNU/Linux - Compiler: g++ (GCC) 10.1.0 ##...
## Question Hi dev-team! I really like the library and learning how to use it. However, I am curious about what is the progress to implement annotation_file input/output for (vcf/bcf/..)....
Currently, `seqan3::field::alignment` is a default field of SAM/BAM files. However, it requires a reference sequence in addition to the SAM/BAM input (if I'm understanding correctly). For the following case, this...
## Question Hi Seqan-Team, I just recently read about XOR Filters and that they were superior to Bloom Filters in regards to memory usage and query time. Do you plan...
