seqan3
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seqan
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
## Platform - SeqAn version: 2.4.0 (plan to update to seqan3 soon) - Operating system: Linux robin-Surface-Book 5.12.2-surface #1 SMP Tue May 11 18:20:34 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux...
Log: https://people.freebsd.org/~yuri/seqan3-tests.log
This PR enables the logging mechanism for the new alignment algorithm implementation. The logging policy is only available if the alignment runs in debug modus. In this case special functions...
## Platform - SeqAn version: latest - Operating system: N/A - Compiler: gcc ## Question Hey all, I am struggling a bit with properly writing unmapped reads to my output...
## Platform - SeqAn version: latest - Operating system: NA - Compiler: NA ## Question Imagine you want to search for peptide sequences (aka needles/patterns) in a protein (text) using...
## Question I have just started using seqan3. I have worked with seqan2 though. I want to ask about multiple sequence alignment and alignment graphs in seqan3. I could not...
## Platform - SeqAn version: - Operating system: - Compiler: ## Description After https://github.com/seqan/seqan3/pull/2276, tests and snippets using the `parallel_queue` do not terminate if there are too many threads accessing...
Support the full specification of the [T-COFFEE_LIB_FORMAT_01](https://tcoffee.readthedocs.io/en/latest/tcoffee_technical_documentation.html#t-coffee-lib-format-01) such that the t-coffee application can read in the t-coffee library format with ranges of residues. Note at the moment only alignment information...
(preparation for computing traceback in vectorised alignment) implement two dimensional iterator wrapper that provides the two_dimensional_matrix_iterator but gets an additional parameter in order to select the simd position to give...
