fm-index topic
cello
A string library
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
ropebwt2
Incremental construction of FM-index for DNA sequences
bwt
Burrows-Wheeler Transform and FM-index in golang
shellinford-python
Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)
MA
The Modular Aligner and The Modular SV Caller
AvxWindowFmIndex
A fast, AVX2 and ARM Neon accelerated FM index library
femto
Sequence Indexing and Search