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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
## PR checklist This is a pull request to include the submodule t1k/run. Here is the tool repository: https://github.com/mourisl/T1K - [X] This comment contains a description of changes (with reason)....
## Description This updates the assemblyscan module to v1.0.0 from v0.4.0, enabling tsv or json output. ## PR checklist - [X] This comment contains a description of changes (with reason)....
## PR checklist updating input suffix check for reference file input, including nf-tests Closes #5021 - [ x ] This comment contains a description of changes (with reason). - [...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
The dev container uses the root user in the container: https://github.com/nf-core/modules/blob/113690eee93197a05f32ca8ff2f175930f6568fb/.devcontainer/devcontainer.json#L12 When run as root, `tar -x` will preserve ownership (uid-gid) of files in the tarball upon extraction. This can...
