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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
## PR checklist Closes #8463 https://github.com/nf-core/modules/issues/8463 This module does the kinship matrix part of gemma. I cannot get docker to work even though there is a biocontainer, and have not...
## PR checklist Closes #6096 - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
### Is there an existing subworkflow for this? - [x] I have searched for the existing subworkflow ### Is there an open PR for this? - [x] I have searched...
https://github.com/nf-core/rnafusion/issues/665 ## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that...
This PR adds Visium test data (https://github.com/nf-core/test-datasets/tree/modules/data/genomics/homo_sapiens/10xgenomics/spaceranger/human-lung-cancer-post-xenium_hd_ffpe) to the SpaceRanger module.
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested, add...
# PR checklist Closes [rnafusion#628](https://github.com/nf-core/rnafusion/issues/628) The reason I am only doing stub tests only is for practicality. The smallest reference i could get was about half a Gb, even when...
This module was developed to download and process the CDD databases necessary to run rpsblast from the FTP site of the NCBI. ## PR checklist - [X] This comment contains...
draft of FASTQ_REMOVE_ADAPTERS_AND_MERGE subworkflow with tests
