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Assemblyscan 1.0.0

Open eit-maxlcummins opened this issue 1 month ago • 2 comments

Description

This updates the assemblyscan module to v1.0.0 from v0.4.0, enabling tsv or json output.

PR checklist

  • [X] This comment contains a description of changes (with reason).
  • [X] If you've fixed a bug or added code that should be tested, add tests!
  • [-] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [-] If necessary, include test data in your PR.
  • [X] Remove all TODO statements.
  • [X] Emit the versions.yml file.
  • [X] Follow the naming conventions.
  • [X] Follow the parameters requirements.
  • [X] Follow the input/output options guidelines.
  • [-] Add a resource label
  • [X] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [X] nf-core modules test <MODULE> --profile docker
      • [-] nf-core modules test <MODULE> --profile singularity
      • [X] nf-core modules test <MODULE> --profile conda

eit-maxlcummins avatar Dec 04 '25 16:12 eit-maxlcummins

@nf-core-bot fix linting

prototaxites avatar Dec 15 '25 13:12 prototaxites

This looks really good, but can we add a second test to validate JSON output?

prototaxites avatar Dec 15 '25 13:12 prototaxites