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Add module t1k/run

Open georgiakes opened this issue 4 weeks ago • 0 comments

PR checklist

This is a pull request to include the submodule t1k/run. Here is the tool repository: https://github.com/mourisl/T1K

  • [X] This comment contains a description of changes (with reason).
  • [X] If you've fixed a bug or added code that should be tested, add tests!
  • [X] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [X] If necessary, include test data in your PR.
  • [X] Remove all TODO statements.
  • [] Emit the versions.yml file.
  • [X] Follow the naming conventions.
  • [X] Follow the parameters requirements.
  • [X] Follow the input/output options guidelines.
  • [X] Add a resource label
  • [X] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [X] nf-core modules test <MODULE> --profile docker
      • [ ] nf-core modules test <MODULE> --profile singularity
      • [ ] nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

georgiakes avatar Dec 11 '25 15:12 georgiakes