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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
Closes #9578 ## Summary High-throughput VCF to PostgreSQL loader using asyncpg for bulk variant ingestion. - Adds `vcfpgloader/load` module for loading VCF variants into PostgreSQL databases - Uses cyvcf2 for...
Add lines to modules `ribocode_metaplots` and `ribocode_ribocode` to make the process fail when invalid outputs are created. ## PR checklist - [X] This comment contains a description of changes (with...
# nf-core/modules pull request This is a brand new module for rpsblast, a BLAST application that searches a protein query against the conserved domain database (CDD). ## PR checklist Reported...
## PR checklist Closes https://github.com/nf-core/differentialabundance/issues/578 - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
## Description Add a new module for **vcf-pg-loader**, a high-performance VCF to PostgreSQL loader using asyncpg for bulk variant ingestion. ## Tool Information - **Name**: vcf-pg-loader - **Homepage**: https://github.com/Zacharyr41/vcf-pg-loader -...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Description of the bug The new-ish positional args warning in nf-core pipelines has some misleading behaviour in at least one edge-case. Using `-stub-run`/`-stub` will produce the following: ``` WARN:...
