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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
This is a first version of PR to add deepsomatic capabilities into nf-core/modules. ## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). -...
In this PR, the version of UMICollapse is bumped to the latest version 1.1.0. Since the original tool author was unresponsive, [the Bioconda version is now built](https://github.com/bioconda/bioconda-recipes/pull/51441) from [a fork](https://github.com/siddharthab/UMICollapse)...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
- **ci: Attempt to split everything out** - **ci: Add changed since, sharding, and ci** - **ci: Add filter to try to get jobs split up** - **ci: Switch to...
This is a list of [parabricks modules](https://docs.nvidia.com/clara/parabricks/latest/softwareoverview.html) that can be created during the Hackathon (just convert these into single issues when you start working on them). *Alignment* - [x] fq2bam...
## PR checklist Update glimpse2 modules - Add nf-test - Add support for bamlist file in glimpse2 phase - [x] This comment contains a description of changes (with reason). -...
Not to be merged (we're not supposed to use the `seqera` channel), but I'm putting this here in case anyone else wonders how to get sortmerna 4.3.7 working in the...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
When tests are run in CI or locally using conda the tests fail with: ``` Caused by: java.nio.channels.OverlappingFileLockException ``` Caused by: https://github.com/nf-core/modules/pull/6600 ## Previous issues - https://github.com/nf-core/modules/pull/5802#issuecomment-2333658568 - https://nextflow.slack.com/archives/C0477AS31T5/p1718212230419419