Update glimpse2 modules
PR checklist
Update glimpse2 modules
-
Add nf-test
-
Add support for bamlist file in glimpse2 phase
-
[x] This comment contains a description of changes (with reason).
-
[x] If you've fixed a bug or added code that should be tested, add tests!
-
[ ] If you've added a new tool - have you followed the module conventions in the contribution docs
-
[ ] If necessary, include test data in your PR.
-
[ ] Remove all TODO statements.
-
[ ] Emit the
versions.ymlfile. -
[x] Follow the naming conventions.
-
[x] Follow the parameters requirements.
-
[x] Follow the input/output options guidelines.
-
[ ] Add a resource
label -
[ ] Use BioConda and BioContainers if possible to fulfil software requirements.
-
Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- For modules:
- [ ]
nf-core modules test <MODULE> --profile docker - [x]
nf-core modules test <MODULE> --profile singularity - [ ]
nf-core modules test <MODULE> --profile conda
- [ ]
- For subworkflows:
- [ ]
nf-core subworkflows test <SUBWORKFLOW> --profile docker - [ ]
nf-core subworkflows test <SUBWORKFLOW> --profile singularity - [ ]
nf-core subworkflows test <SUBWORKFLOW> --profile conda
- [ ]
- For modules: