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Update glimpse2 modules

Open LouisLeNezet opened this issue 1 year ago • 0 comments

PR checklist

Update glimpse2 modules

  • Add nf-test

  • Add support for bamlist file in glimpse2 phase

  • [x] This comment contains a description of changes (with reason).

  • [x] If you've fixed a bug or added code that should be tested, add tests!

  • [ ] If you've added a new tool - have you followed the module conventions in the contribution docs

  • [ ] If necessary, include test data in your PR.

  • [ ] Remove all TODO statements.

  • [ ] Emit the versions.yml file.

  • [x] Follow the naming conventions.

  • [x] Follow the parameters requirements.

  • [x] Follow the input/output options guidelines.

  • [ ] Add a resource label

  • [ ] Use BioConda and BioContainers if possible to fulfil software requirements.

  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:

    • For modules:
      • [ ] nf-core modules test <MODULE> --profile docker
      • [x] nf-core modules test <MODULE> --profile singularity
      • [ ] nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

LouisLeNezet avatar Oct 22 '24 13:10 LouisLeNezet