modules
modules copied to clipboard
Repository to host tool-specific module files for the Nextflow DSL2 community!
### Have you checked the docs? - [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug As described [here](https://github.com/nf-core/sarek/issues/1575), the `versions.yml`-generating code in the modules...
### Have you checked the docs? - [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug I want to add the module trimgalore into my...
Conda `environment.yml` files are convenient and easy to use, but do not confer a high degree of reproducibility. Because lower level dependencies are not pinned, the exact build produced can...
Essentially we need to add to all the environment.ymls ```yml channels: - conda-forge - bioconda dependencies: # renovate: datasource=conda depName=bioconda/bwa - bwa=0.7.18 # renovate: datasource=conda depName=bioconda/samtools - samtools=1.20 # renovate:...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
Specifically for https://github.com/nf-core/website/pull/2740
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
Once the tooling in nf-core/tools is complete (https://github.com/nf-core/tools/issues/3952) and we have automation / templates ready to go, we should go through all existing modules and bulk-update them to use Seqera...
## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
Follow on to https://github.com/nf-core/modules/issues/5832 to discuss specifically the automation for fetching Seqera Containers.