Add deepsomatic module scaffolding
This is a first version of PR to add deepsomatic capabilities into nf-core/modules.
PR checklist
Closes #XXX
- [x] This comment contains a description of changes (with reason).
- [x] If you've fixed a bug or added code that should be tested, add tests!
- [x] If you've added a new tool - have you followed the module conventions in the contribution docs
- [x] If necessary, include test data in your PR.
- [x] Remove all TODO statements.
- [x] Emit the
versions.ymlfile. - [x] Follow the naming conventions.
- [x] Follow the parameters requirements.
- [x] Follow the input/output options guidelines.
- [x] Add a resource
label - [x] Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- For modules:
- [x]
nf-core modules test deepsomatic --profile docker
- [x]
- For modules:
@nf-core-bot fix linting pretty please :pray:
Nothing for me to do here! :shrug:
This is probably because the linting errors come from nf-core lint and have to be fixed manually (or with nf-core lint --fix).
@nf-core-bot fix linting pretty please :pray:
Please @nf-core-bot fix linting pretty please :pray: :pray:
hi @maxulysse, I've committed proposed input channels re-arrangement and excluded deepsomatic from conda and singularity tests.
@nf-core-bot fix linting pretty please :pray:
Nothing for me to do here! :shrug:
This is probably because the linting errors come from nf-core lint and have to be fixed manually (or with nf-core lint --fix).