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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
In the last few months we have swapped the file paths used in tests from: ```nextflow file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ``` to direct paths like: ```nextflow file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta', checkIfExists: true)...
See https://github.com/nf-core/modules/issues/5829 Batch 6, to stay under the CI limit.
## WARNING - [ ] I have made sure to update the singularity and conda images This PR contains the following updates: | Package | Type | Update | Change...
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pbsv
## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
Some snpeff database (such as Candida auris ) have not been available to download in snpeff v5.1. Only snpeff_v5.2_Candida_auris database is available. If nf-core snpeff does not update to v5.2,...
Some snpeff database (such as Candida auris ) have not been available to download in snpeff v5.1. Only snpeff_v5.2_Candida_auris database is available. If nf-core snpeff does not update to v5.2,...
Some snpeff database (such as Candida auris ) have not been available to download in snpeff v5.1. Only snpeff_v5.2_Candida_auris database is available. If nf-core snpeff does not update to v5.2,...