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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
Some snpeff database (such as Candida auris ) have not been available to download in snpeff v5.1. Only snpeff_v5.2_Candida_auris database is available. If nf-core snpeff does not update to v5.2,...
## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
### Have you checked the docs? - [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [x] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug -R tag for regions has to be change to...
This module is used to create a .gmt file given a list of genes. Currently, it only parses info from GO terms. Ideally, one can chose to parse info from...
- [ ] Use the code from the local version of the module `PROPR/GREA` inside `nf-core/differentialabundance` - `dev-ratio` branch to update the nf-core version + add nf-test + etc -...
- [ ] Use the code from the local version of the module `PROPR/PROPR` inside `nf-core/differentialabundance` - `dev-ratio` branch to update the nf-core version + add nf-test + etc -...
- [ ] Use the code from the local version of the module `PROPR/PROPD` inside `nf-core/differentialabundance` - `dev-ratio` branch to update the nf-core version + add nf-test + etc -...
## PR checklist Closes #5987 This PR adds a new module: pypgx/runngspipeline - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug...
The `meta.yml` of subworkflows should have the proper structure descirbing the structure of input and output channels. A new flag `--fix` has been added to nf-core/tools v3.0.0 to help you...
Bump genmod and add stub tests, snapshot versions. ## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've...
