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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
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This pull request updates the containers to version 2.7.1, which enables the pod5 file support. Additionally, the maintainers list has been updated to include "@eperezme".
## WARNING - [ ] I have made sure to update the singularity and conda images This PR contains the following updates: | Package | Type | Update | Change...
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To support work in https://github.com/nf-core/modules/pull/6753, it may be better to place variables other than the contrast first in the model. ## PR checklist Closes #XXX - [ ] This comment...
Kept having bwamem2 index tasks that ran forever and failed. Updated bwamem2 to use 28.B of memory per byte of fasta. Issue for reference: https://github.com/bwa-mem2/bwa-mem2/issues/9 Also tracked down the required...
Dear Team, We noticed a strange behavior of the DESeq2 module when used inside the NFcore differentialabundance pipeline. DESeq2 allows to testing for differential expression with null hypothesis logFC=0, but...
- Cleans up `BUSCO_BUSCO` nf-tests to use a single config. - Cleans up `WINDOWMASKER_CONVERT` nf-tests to use a single config. - More can be found with `find modules/nf-core -path "*/tests/*.config"...
This prevents [permission issues](https://github.com/alexdobin/STAR/issues/145) for creating `tmp` directory during `STAR` alignment. In addition, it saves storage for the working directory. ## PR checklist - [x] This comment contains a description...
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