bacass
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nf-core
Simple bacterial assembly and annotation pipeline
### Description of the bug ## Description: The pipeline runs successfully when using absolute paths, but fails when using relative paths. None relative paths seemed to work. This include input,...
## Description of feature We need a configuration test profile and its CI to confirm the KmerFinder step is functioning correctly. The main challenge is using/creating a downsampled database that...
### Description of feature Update the conda version various local modules: - [x] modules/local/dfast - [x] modules/local/custom/multiqc - [x] modules/local/kmerfinder/summary/
Resolves Issue #208 ## PR checklist - [X] Added MEGAHIT module from nf-core modules - [X] Ran nf-core modules lint megahit - - Warning from the container registry: Unable to...
- [ ] Fork the pipeline to your user account, if you have not done so before (Make sure you deselect `Copy the master branch only`) - [ ] Go...
### Description of feature ## Description Implement a module for [MEGAHIT](https://github.com/voutcn/megahit), a fast and memory-efficient assembler designed for assembling Illumina short reads, especially in metagenomic contexts. ## Goal - Create...
### Description of feature Update the dragonflye module to version 1.2.1 using nf-core tools. This update depends on [nf-core/modules#7875](https://github.com/nf-core/modules/issues/7875)
Dear developers, We are trying to use additional parameters `--kmerfinder_db` and `--ncbi_assembly_metadata` for bacass workflow with release 2.4.0 or development version. Both are failed with the following error: ``` WARN:...
### Description of feature improve the consensun assembly using a automatic nº round of polishing
### Description of the bug I am running into an issue with the generation of the MultiQC report in the bacass pipeline. This process runs into an "input file name...
