bacass
bacass copied to clipboard
nf-core
Simple bacterial assembly and annotation pipeline
Version `2.14.1` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...
### Description of feature Two warning messages appear during the execution of tests in the nf-core/bacass GitHub CI. ``` WARN: A process with name 'MINIMAP2_CONSENSUS' is defined more than once...
### Description of feature ## Overview Hello!, My colleagues and I have been actively working on enhancing the nf-core/bacass workflow to address lab-specific challenges in bacterial genome assembly. We are...
This is a collection of ideas that should be considered after the DSL2 conversion #56 is finished. The list is subject to change. Any ideas or discussions are welcome. ####...
Several processes are using tools that are maybe interesting also in other pipeline and could be made available in [nf-core/modules](https://github.com/nf-core/modules/tree/master/modules), such as: - modules/local/canu.nf - modules/local/dfast.nf - modules/local/medaka.nf - modules/local/miniasm.nf...
Is there a way to process single end reads with bacass? I am attempting to modify config files, and it would be amazing if you already had a solution in...
## Description of the bug ``` Module compilation error - file : /home/user/.nextflow/assets/nf-core/bacass/./workflows/../modules/local/skewer.nf - cause: expecting '}', found ',' @ line 26, column 55. , emit: lo ^ 1 error...
## Description of the bug The documentation describes that the input sample sheet is a tab-separated file but it labelled csv in the [example](https://github.com/nf-core/bacass/blob/2.0.0/assets/samplesheet.csv). The pipeline fails if the suffix...
## Description of the bug Since the last update 2.0.0 the Nanoplot command expect a .png output but this output format was removed from version 1.1.1 to 2.0.0. I solved...
