Mathias Goncalves
Mathias Goncalves
@magicbrainresearch did you have any success?
This may be hitting https://github.com/nipy/nipype/issues/3493 Can you try clearing the `WORK_DIR/fmriprep_22_0_wf/single_subject_retrotest001_wf/func_preproc_ses_01_task_arrows_acq_3x2me3_dir_PA_run_01_echo_1_wf/bold_t2smap_wf/t2smap_node` directory and rerunning?
can you share the filenames of the `func/` files for this problematic subject?
There is an active branch where we're been testing this feature (https://github.com/nipreps/fmriprep/pull/2392), and I'd say it's fairly close. But because the shift includes a substantial change in which SDC algorithm...
Chiming in since i'm dealing with constantly changing age values working with multi-session infant data. Overall I think it would help with readability / potential errors to avoid a calculation...
The current solution is to just process 1 session at a time, specifying the age (in months) through a flag. This isn't very scalable though - I was thinking of...
nope test ```python In [1]: import bids In [2]: bids.__version__ Out[2]: '0.15.0' In [3]: layout = bids.BIDSLayout('.', validate=False) In [4]: layout.get_sessions(scope='raw') --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) Input In...
Hi @kaihwang - our GE support is fairly rudimentary. If you could share some of your problematic DICOMs, I can take a look at it later this week.
@kaihwang this looks to be a problem at the level of the DICOM/pydicom tag reading. I was able to replicate it with the following: ```python In [1]: import pydicom In...
@Shotgunosine have you tried using the `--minmeta` flag? That should reduce the # of fields in your sidecar files to just `dcm2niix` fields.