fMRIPrep v20.2.6 Stuck Forever in "Changing /MyBIDS/sub-0001/anat/sub-0001_space-MNI152NLin2009cAsym_dseg.nii.gz dtype from float64 to int16"

[magicbrainresearch]

I downloaded the latest version (v20.2.6) of fMRIPrep from https://github.com/nipreps/fmriprep

and built it without changing anything successfully. Then I ran it on a multi-echo resting fMRI data (4 runs, 3 echos for each run) just one subject. But it always Stuck Forever in

"Changing /MyBIDS/sub-0001/anat/sub-0001_space-MNI152NLin2009cAsym_dseg.nii.gz dtype from float64 to int16"

No moving from this point.

I have tried this for several times, but the same problem.

But v20.2.3 had no such a problem. Please check and help

Thank you!

David

[effigies]

Hi, can you use the bug report template? This will prompt you for the information we would need to look into this issue. I would suggest adding -v or -vv flags to increase the verbosity and make it more likely that the issue appears in the logs.

[magicbrainresearch]

Ok will put into bug report template again. Will add -v or flags to try again. Btw, the command I used is as follows:

docker run -v $PWD:/Work --entrypoint fmriprep -it --rm nipreps/fmriprep:v20.2.6 /Work/MyBIDS /Work/MyBIDS_fmriprep_v20.2.6_out participant --participant-label 0001 --use-aroma --cifti-output 91k --output-spaces MNI152NLin6Asym:res-2 MNI152NLin2009cAsym -w /Work/work_sub-0001_fmriprep_v20.2.6

[effigies]

It looks like you're using FreeSurfer. Is it possible that you're just waiting on FreeSurfer, which can take several hours?

[mgxd]

@magicbrainresearch did you have any success?