Mathias Goncalves
Mathias Goncalves
hi @dkp is this still a problem?
The `--overwrite` flag is intended to facilitate re-conversions (@yarikoptic feel free to chime in, I know we have pushed and pulled on this before) - without it, heudiconv will not...
hi @c42f With all the different BIDS extensions popping up, feature creep is looming... the standalone script idea sounds good to me. Ideally it could be used complementary with heudiconv....
Hi Dima, We don't explicitly test heudiconv on Windows - our preferred method is via Docker container. Your best bet is to try installing the docker toolbox for legacy systems...
@desserdmi I've created a patch, you can install with ``` pip install https://github.com/mgxd/heudiconv/archive/fix/win.zip ``` can you retry your conversion with this version?
of course, it would make it nearly unreviewable! I meant showing some love to formatting prior to the next release, and then inserting a style check into our CI
hi @hacevedo - the `-d, --dicom_dir_template` argument was preserved to allow for backwards compatibility, but I would recommend using the `--files` arg instead - it may make life much easier....
ah - that needs to be updated after #293.. And if you are using a heuristic with a defined `infotoids()` method (i.e. reproin), that may explain why. perhaps we can...
hi @tjhendrickson - it looks like something was messed up when creating a `task-.json` file - could you try deleting that file and reconverting? What command are you calling to...
alternatively, we could stick `.heudiconv/` into `/code` in the case of BIDS conversions