gene-regulation topic

Fast Inference of Networks from Directed Regulations

lingfeiwang

Detecting Regulatory Elements using GRO-seq and PRO-seq

Danko-Lab

Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"

kundajelab

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

aertslab

pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs

asntech

Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks

SunXQlab

An R package for multi-dimensional pathway enrichment analysis

markziemann