Kundaje Lab

Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data

kundajelab

Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)

kundajelab

CS273B Deep Learning for Genomics Course Materials

kundajelab

Deep Feature Interaction Maps (DFIM)

kundajelab

Downloader for ENCODE

kundajelab

In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.

kundajelab

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

kundajelab

Simple and efficient access to genomic data for deep learning models.

kundajelab

Accompanying repository for GkmExplain paper

kundajelab

IDR

kundajelab