alzheimers_parkinsons
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kundajelab
kundajelab
Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
Single-cell epigenomic identification of inherited risk loci in Alzheimer’s and Parkinson’s disease
https://www.biorxiv.org/content/10.1101/2020.01.06.896159v1
Bulk ATAC-seq data processing / peak calling
Differential accessibility analysis with DESeq2 and limma voom
Single-cell ATAC-seq data processing / peak calling
LD score regression: Cell type specific analyses
Colocalization analysis
SVM model training
SNP effect scoring with SVMs
SNP effect interpretation
Neural network training
Neural network interpretation/ variant score visualization
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kundajelab
Metadata
Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis