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problem running SPAdes error -11

Open tmms345 opened this issue 9 months ago • 11 comments

Description of bug

Hi, When I try to run my assembly it gives me this error:

== Error == system call for: "['/home/name/salmo/SPAdes-3.15.4-Linux/bin/spades-hammer', '/home/name/salmo/Spades_out_dir/ISZ-2_S5/corrected/configs/config.info']" finished abnormally, OS return value: -11

I tried running on both linux and WSL, but with the same result and I tried also with conda.

spades2.log is from linux spades1.log in from WSL

params.txt is from linux

spades.log

spades2.log spades1.log

params.txt

params.txt

SPAdes version

SPAdes-3.15.4-Linux

Operating System

Ubuntu 22.04.3 LTS

Python Version

Python 3.9.12

Method of SPAdes installation

Binaries, Conda

No errors reported in spades.log

  • [X] Yes

tmms345 avatar Oct 04 '23 18:10 tmms345