ggtree
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YuLab-SMU
:christmas_tree:Visualization and annotation of phylogenetic trees
Hi Guangchuang, I used your ggtree package with success a year or so ago but can't repeat what I did then, using the dat input material/data, after updating R/ggtree/everything, since....
### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure your are using the latest release version * [x] read the [documents](https://guangchuangyu.github.io/ggtree/documentation/) * [x]...
Hello: Utilizing the msplot function, I was able to produce a circular tree with a corresponding alignment. The positions are colored based on amino acid type. Is there a method...
余老师。您好，我是一名研二的学生。在用gheatmap画聚类热图时，我想在热图中的每个方块上添加显著性差异，差异是用字母表示的，我已经将字母输入在另外一个矩阵中，请问，怎样将这个矩阵的字母添加在gheatmap中呢？ 我目前的笨方法是用annotate()一行一行添加，但有些方块需要添加三个字母，有些是添加一个，这就造成在方块中调节字母居中要花大量时间的问题！ 希望您能抽出时间完善gheatmap，非常感谢！  
Hi, I wonder if you could add vjust to geom_cladelabel, which is specially necessary when having nested clades, because their names may overlap, or for aesthetic reasons. I think it...
I read all the vignettes and know about the viewClade function, but I was looking for something like extract.clade from ape to completely separate a clade, and not only the...
Hi The package is great. Just starting using it. But got a hard time trying to figure out how to link my table using "%
I am using ggtree for circular / fan tree images and would like to create publishable images. I have two major issues: 1. When a tree has short branch lenghts...
Is it possible to mimic the behaviour of figtree where the colour of the branches is determined based on the status of the node they connect to and then a...
