ggtree
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YuLab-SMU
:christmas_tree:Visualization and annotation of phylogenetic trees
Hi there, First I'd like to say that I really love your work. It has been extremely useful lately. I would like to ask, I've been trying to label my...
Hi Guangchuang ggtree is awesome! I have a ggtree object and a ggplot object. How to overlap these two? No need to care about the labels. I just want map...
## not working for `hclust` output ``` > library(ggplot2) > library(ggtree) > hc ggtree(hc) ``` Error: ``` > ggtree(hc) Error: `data` must be a data frame, or other object coercible...
Dear professor, I want to re root the tree according to the out group assigned. I use the FigTree Reroot function, the results is good. However I use R package...
Hi Guangchuang, When i run the followed code, i can not obtain the clade subtree. Do you know the reason? Thanks for your help! library(ggtree) library(tidytree) nwk
### Prerequisites + [ ] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [ ] make sure your are using the latest release version * [ ] read the...
Hi Guangchuang Yu, First I really like ggtree and could already do a lot of cool graphs with it ! So thanks for developing the package ! Second, I have...
Dear Guangchuang I am a huge fan of ggtree, thanks for developing this amazing tool! I just tried to annotate my tree with some additional metadata according to https://aschuerch.github.io/posts/2017-04-24-blog-post-1. In...
Hi! I'm trying to emulate DensiTree plots using ggtree. It is clear that ggtree can't generate trees like this at the moment: https://pbs.twimg.com/media/CNn5DgkWIAAQxmC.jpg . I tried plotting all the trees...
``geom_treescale`` interacts oddly with the fan layout: * If you give x and y they are actually interpreted as r and theta (polar coordinates) * The units for y are...
