ggtree
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YuLab-SMU
:christmas_tree:Visualization and annotation of phylogenetic trees
Hello! Codeml does not produce separate mlc files anymore, the data are merged with the general output file defined in codeml.ctl. I was wondering if I could see an actual...
### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure your are using the latest release version * [x] read the [documents](https://guangchuangyu.github.io/ggtree/documentation/) * [x]...
### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure your are using the latest release version * [x] read the [documents](https://guangchuangyu.github.io/ggtree/documentation/) * [x]...
Hello, First of all, thanks for making this super awesome package! Not sure how I haven't discovered it before now, but I love it. Thanks! I was wondering if it...
(Update: 2016-11-11 8:35 AM CST): I added images of the trees I was talking about. Hi, I found this recent article from the authors of RAxML, that reviews many tree...
The "read.fasta" function inside "msaplot" was masked by another function with the same name in "seqinr", lead to a error showing " Error in data.frame(name = names(seqs)[i], xmin = xmin,...
Code to reproduce the bug with error log: ```R > library("tidyverse") > library("RNeXML") Loading required package: ape > library("treeio") Attaching package: ‘treeio’ The following object is masked from ‘package:ape’: drop.tip...
Hi, Everyone! I want to draw a heatmap from a phyloseq class file. Phyloseq class files contained out tables, sample information, and taxa classification. Could I draw a heatmap from...
Hello, I was trying to do a plot following the ggtree advanced vignette, when I received a lot of warnings() related to the use of ggimage, I wonder if you...
Hi and thanks for a great package, I would like to combine the msaplot with facet_plot inserting a text column next to the msaplot , but this splits the msaplot...
