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YuLab-SMU
:christmas_tree:Visualization and annotation of phylogenetic trees
Hello, after I rotate a node in a fan tree the tip labels are wrongly displayed. Adding an angle to geom_tiplab does not change anything. Is their a way to...
I would love to see a 2D "phylomorphospace" plotting feature in a future version of ggtree. I believe it would be really useful for many types of users to show...
Dear Pro. Yu I **manually** highlighted several branches belonging to one taxonomy in tree using the geom_hilight() function (such as _**frame1 in image 1**_). But it was low efficient when...
Hi, I have a phyloseq object containing a phylogenetic tree at OTU level and I would like to do somenthing like this: data(GlobalPatterns) GP 0, GlobalPatterns) GP.chl
## reprex ``` library(ape) library(tidytree) set.seed(2017) tree
Hello, I post this as a feature request since I did not see this possibility in available documentation. Using `ggtree::collapse`, I collapse many clades as triangles, but I don't want...
Hello, `ggtree::read.tree` aborts RStudio, both on my Desktop Rstudio and within a [Bioconductor Docker container](https://github.com/Bioconductor/bioconductor_docker). ### Reprex ```R tree_path
```{r tree} pacman::p_load(treeio,ggtree,patchwork) set.seed(100) p1
Hi! First of all, thanks for producing such a great visualization tool for phylogenies! I am using ggtree with plotly to produce some interactive views of a huge phylogeny with...
Dear Professor Yu, Here, we constructed a phylogenetic tree using the neighbor-joining method in MEGA (command line version 11.0.10 ), including 3847 genomic sequences (attached tree file 1 [tree1.nwk.zip](https://github.com/YuLab-SMU/ggtree/files/7638369/tree1.nwk.zip)). The...
