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YuLab-SMU
:christmas_tree:Visualization and annotation of phylogenetic trees
I have been trying to plot a heatmap with the gheatmap function and I wanted the tiles to be seamless i.e. not be separated. I did use the argument "color=NA"...
Hi ggtree team, I have been trying to plot discrete ancestral states at nodes with pie charts created using nodepie(). It works completely fine with the default layout. However, my...
I'm editing a time-scaled tree using ggtree. The dates are correctly adjusted when I apply the 'mrsd' command and 'theme_tree2()', but when I try to rotate the tree with 'layout_dendrogram()',...
Hi, thank you for this amazing tool. I would like to put multiple categories/sample on the x-axis. However, only one is appearing for now. My purpose is to put geom_tile...
### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure your are using the latest release version * [x] read the [documents](https://yulab-smu.github.io/treedata-book/) * [x]...
Hello, I am having fun with ggtree and it has been great to make figures. I was really excited to learn how to make trees with emojis and I was...
I'm running this example code to use geom_hilight : library(ggtree) set.seed(102) tree
When clades are collapsed in circular layout, the "triangle" representation is curved. ```r nwk
Is it possible to add a colour to scale_alpha_continuous so that it is the same as the colour of my fills. I have two rings in the tree with colour...
I would like to add a geom_hilight for each phyla from the tip all the way to the root of each phylum. Here is my script and the table below...