ggtree

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Error in grid.Call.graphics(C_setviewport, vp, TRUE) : non-finite location and/or size for viewport

1

Hi, Thank you for the ggtree package. Unfortunately, I did not manage to use geom_insent. Here is the error message I get: Error in grid.Call.graphics(C_setviewport, vp, TRUE) : non-finite location...

Lan-h

geom_hilight with gradient does not show anything

5

### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure your are using the latest release version * [x] read the [documents](https://yulab-smu.github.io/treedata-book/) * [x]...

joelnitta

As shown in Chapter 7 of the book: ``` nwk

nick-youngblut

The `fontface` parameter gives a warning message when used in `geom_cladelabel`: ``` library(ggtree) set.seed(3) ggtree(rtree(10)) + geom_tiplab() + geom_nodelab(aes(label = node)) + geom_cladelabel(node = 14, label = "A", offset =...

Legana

image retrival from phylopic assumes image size

2

Hello, The automatic download from Phylopic is very convenient but I found a small problem: ggtree (version 3.2.1) tries to download an image with a size of 256x172, even when...

tiagonardi

how to solve x-axis line-end?

5

code: ```{r} #! /usr/bin/env Rscript pacman::p_load(treeio,ggtree,data.table,ggprism) tree % .[,node] data % as.data.table() ,b=as.data.table(tree$edge.length)) %>% setnames(c('V1','V2','V3')) %>% mutate(V0=paste0(V1,"-",V2),.before=1) %>% filter(V2 %in% inode) alen % sort(decreasing = T) %>% .[1] times

felixlee0608

Hi Prof. Yu, Thank you for a wonderful package. It really helps my science alot. I am having trouble making a figure in which the paths between a subset of...

svedwards

tutorial: Chapter10.3

2

Hi When I am running the tutorial of: https://yulab-smu.top/treedata-book/chapter10.html, chapter 10.3, I met a problem shown: **Error in structure(list(node = node, fill = fill, alpha = alpha, extend = extend,...

Tsingsjeen

use graph layout to visualize tree

3

pseudo-code: ``` ggtree

GuangchuangYu

Coloring one edge with multiple trait values

2

Currently `ggtree` can color the branches of a tree by assigning values to all the edges or nodes. But in my case, the trait value of each lineage is changing...

EvoLandEco