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Warning message from `geom_cladelabel`

Open Legana opened this issue 3 years ago • 0 comments
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The fontface parameter gives a warning message when used in geom_cladelabel:

library(ggtree)
set.seed(3)
ggtree(rtree(10)) + 
  geom_tiplab() +
  geom_nodelab(aes(label = node)) +
  geom_cladelabel(node = 14, label = "A", offset = 0.1, barsize = 1, fontface = 2) 

Warning: Ignoring unknown parameters: fontface

However, using fontface = 2 does change the label text to bold.

This warning message does not arise when using the fontface parameter in geom_cladelab.

000053

Session information:


R version 4.1.1 (2021-08-10)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Monterey 12.0.1

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ampir_1.1.0         ggtree_3.0.4        randomcoloR_1.1.0.1 broom_0.7.11        ggtext_0.1.1        pals_1.7           
 [7] patchwork_1.1.1     treeio_1.16.2       ape_5.6-1           forcats_0.5.1       stringr_1.4.0       dplyr_1.0.7        
[13] purrr_0.3.4         readr_2.1.1         tidyr_1.1.4         tibble_3.1.6        ggplot2_3.3.5       tidyverse_1.3.1    

loaded via a namespace (and not attached):
  [1] Rtsne_0.15           colorspace_2.0-2     ellipsis_0.3.2       class_7.3-19         Peptides_2.4.4      
  [6] fs_1.5.2             aplot_0.1.2          gridtext_0.1.4       dichromat_2.0-0      rstudioapi_0.13     
 [11] listenv_0.8.0        farver_2.1.0         bit64_4.0.5          prodlim_2019.11.13   fansi_1.0.2         
 [16] lubridate_1.8.0      xml2_1.3.3           codetools_0.2-18     splines_4.1.1        knitr_1.37          
 [21] jsonlite_1.7.2       pROC_1.18.0          caret_6.0-90         cluster_2.1.2        dbplyr_2.1.1        
 [26] BiocManager_1.30.16  mapproj_1.2.8        compiler_4.1.1       httr_1.4.2           backports_1.4.1     
 [31] assertthat_0.2.1     Matrix_1.3-4         fastmap_1.1.0        lazyeval_0.2.2       cli_3.1.0           
 [36] htmltools_0.5.2      tools_4.1.1          gtable_0.3.0         glue_1.6.0           reshape2_1.4.4      
 [41] maps_3.4.0           V8_4.0.0             Rcpp_1.0.8           cellranger_1.1.0     vctrs_0.3.8         
 [46] nlme_3.1-152         iterators_1.0.13     timeDate_3043.102    xfun_0.29            gower_0.2.2         
 [51] globals_0.14.0       rvest_1.0.2          lifecycle_1.0.1      future_1.23.0        MASS_7.3-54         
 [56] scales_1.1.1         ipred_0.9-12         vroom_1.5.7          hms_1.1.1            parallel_4.1.1      
 [61] yaml_2.2.1           curl_4.3.2           ggfun_0.0.4          yulab.utils_0.0.4    rpart_4.1-15        
 [66] stringi_1.7.6        foreach_1.5.1        tidytree_0.3.7       lava_1.6.10          rlang_0.4.12        
 [71] pkgconfig_2.0.3      evaluate_0.14        lattice_0.20-44      recipes_0.1.17       labeling_0.4.2      
 [76] bit_4.0.4            tidyselect_1.1.1     parallelly_1.30.0    plyr_1.8.6           magrittr_2.0.1      
 [81] R6_2.5.1             generics_0.1.1       DBI_1.1.2            pillar_1.6.4         haven_2.4.3         
 [86] withr_2.4.3          survival_3.2-11      nnet_7.3-16          future.apply_1.8.1   modelr_0.1.8        
 [91] crayon_1.4.2         utf8_1.2.2           tzdb_0.2.0           rmarkdown_2.11       grid_4.1.1          
 [96] readxl_1.3.1         data.table_1.14.2    ModelMetrics_1.2.2.2 reprex_2.0.1         digest_0.6.29       
[101] gridGraphics_0.5-1   stats4_4.1.1         munsell_0.5.0        ggplotify_0.1.0     

Legana avatar Jan 18 '22 05:01 Legana