enrichplot

enrichplot copied to clipboard

Create a gseaResult object from a data.frame

5

Dear Yu lab, Thank you for the nice package you developed. Would it be possible for you to include in the package a function that allows using GSEA results from...

leonorrib

Hi enrichplot team, Thanks for offering such a great package for plotting enrichment analysis results! When trying installing the development version of the package from github, using the following code...

ktong25

This issue is really more like an enhancement request (apologies if I didn't mark it properly), but I noticed today that when using cnetplot, the spacing of the nodes for...

dpanyard

Dear Yu group, I used the cnetplot to draw a circular plot, the overall plot looks nice, but my collaborator does not like the default color for edges for some...

YyLu5

Dear YuLab, I think the size parameter in the function dotplot.enrichResult is not fully implemented. I cannot use it to adjust my x-axis. See below: ggo

fmarchildon

Hi, Thank you for the great package! I was wondering if it is possible to add 'showCategory=your_interest_gos' like is used in cnetplot (see #45 ), to upsetplot. Thank you!

jodithea

Hi ! Thanks for your great work on all these enrichment-related packages. I would have a suggestion : I think it would be nice to obtain ridgeplot for enrichResult, thanks...

aoumess

Here selected terms is a vector of selected terms Warning messages: 1: In if (length(df$Count) > N) { : the condition has length > 1 and only the first element...

smk5g5

Hi @GuangchuangYu ! Thanks for this great package! Do you plan to support also result objects from the [EnrichmentBrowser](https://bioconductor.org/packages/release/bioc/html/EnrichmentBrowser.html) Bioconductor package? I think that would be really great!

jorainer

我试了一下： ```r dotplot(edo, showCategory=20, orderBy='pvalue') + geom_path(aes(GeneRatio, Description), group=1, size=.3, colour='steelblue') + coord_polar(theta='y') ``` 得到这样的图：  现在dotplot画compareClusterResult是好像画heatmap那样，我觉得可以像画enrichResult一样，但点会混在一起嘛，所以用连线不同颜色来代表不同的clusters，以这样的形式也可以，写一个dotplot2。 然后这个只要转换为极坐标，就可以如radar plot一般。

GuangchuangYu