enrichplot
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YuLab-SMU
Visualization of Functional Enrichment Result
`emapplot()` failed with 0 or 1 records of `enrishResult` ``` > class(a) [1] "enrichResult" attr(,"package") [1] "DOSE" > nrow(a) [1] 1 > a@result ID Description GeneRatio BgRatio pvalue p.adjust qvalue...
Hi, Guangchuang, I want to use the goplot function to visualize the relationship between selected GO terms. But the parameter (showCategory=) seems to be only numeric type, and can not...
Dr. Guangchuang Yu, I am facing the same issue with cnetplot and emapplot. I'm unable to see the edges. I did go through the support link https://support.rstudio.com/hc/en-us/articles/200488548-Problem-with-Plots-or-Graphics-Device:. I tried decreasing...
Hi, Can we add `title` parameter to `upsetplot` and make it compatible with `ggtitle`? Just like here: https://github.com/hms-dbmi/UpSetR/issues/76 https://github.com/jonocarroll/UpSetR/commit/ea70aa3a70c287822eedd7c88d83d26eaf5f3ee5
Hello, I am using the cnetplot function in clusterProfiler to plot the top 5 over-represented pathways in my gene list. I would like to increase the font size of the...
I love the visualization of the cneplots for my GSEA enrichments. Is there a way to implement this with multiple input enrichment lists like is done for dotplots for clustercompare?...
Dear Yu， I used gesaplot2 to plot multiple gene sets in one sample. How can I use gesaplot2 to plot one gene set across multiple samples? I try to use...
I was wondering what the red-to-blue gradient should represent (geom_rect in subplot 2). In broadinstitute's GSEA results, the switch from red to blue happens on the zero-cross of the ranked...
Most of the enrichplot support "enrichresult", "gsearesult" and "compareClusterResult", why not to add such a feature to the emapplot()? 💯
