enrichplot

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为什么treeplot画出来的Go term,字体没有颜色

3

 code是这样的：treeplot(edox2,showCategory = 30,fontsize = 5, cluster.params = list(method = "ward.D",n = 5, label_words_n = 7)) 是我漏掉了哪个参数么？ 可是我看别人的是直接运行就有对应的颜色额

jinlanzhan

error using emapplot on compareCluster results wit all GO onotologies

6

Hello, I ran compareCluster on three gene lists using the function enrichGO and including ALL GO ontologies. Then, I calculated term similarity with pairwise_termsim and method "JC". When trying to...

jelman

Emapplot compareCluster : How to remove the legend of the number of genes per circle?

2

Hello, In the case of an emapplot generated from an output of the compareCluster function, is it possible to remove the legend indicating the number of genes per circle? I...

Blondeau-Bidet

Hello, Thank you for developing the valuable tools for enrichment analysis. I am writing to request the addition of a feature in the cnetplot function from the enrichplot package. **Label...

jacobHog

Error “Cannot convert object of class gglistlist into a grob”

3

I met a problem，please help me : code show as below： kegmt2

xxbb23

Hello, I wanted to ask if you could specify the enriched categories to be plotted when using the upsetplot function, or can you only specify the number of categories to...

jordlang01

UseMethod("rescale") error using cnetplot() function

5

cnetplot() failed with: Error in UseMethod("rescale") : no method for 'rescale' applicable to an object of class "AsIs" with R version 4.1.2 i have installed ggnewscale package but nothing change....

lmanchon

Recolouring treeplot

1

Hi! Really nice package, thank you! I am trying to modify the colouring for treeplot. I was able to modify the code for gseaplot2 pretty easily by changing the function...

danphillips28

可以用ggarrange 组合多张gseaplot2 图吗？

4

可以用ggarrange 组合多张gseaplot2 图吗？ 貌似不可以，gseaplot2是多图层无法返回plot。gseaplot[[1]] 也不行。 请问有什么方法，谢谢。

zhangzhanglan

How to implement treeplot to genes

4

Hi, I'm a phd student from cityU, HK. I found your 'treeplot' is of greatly interesting to us when we need to make in-depth insights into numerous GO-enriched terms. However,...

Jwenyi