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Published 20 hours ago • verified publisher icon YuLab-SMU

Create a gseaResult object from a data.frame

Open leonorrib opened this issue 4 years ago • 5 comments

Dear Yu lab,

Thank you for the nice package you developed. Would it be possible for you to include in the package a function that allows using GSEA results from other softwares? It could be by allowing to create a gseaResult object from a data.frame, for example. I believe a lot of people would use enrichplot more if that was possible.

Best regards, Leonor

leonorrib avatar Jun 24 '20 14:06 leonorrib

Hello all

As I said in another suject, I am very interested in that possibility too.

Thank you

ederisoud avatar Jul 17 '20 16:07 ederisoud

Same for me too! I used fgsea, but the data.frame produced can't be used with gseaplot2.

Any help is much appreciated.

sawhelan44 avatar Oct 23 '20 12:10 sawhelan44

I am very much in need of the same thing.

NeginValizadegan avatar Nov 07 '20 22:11 NeginValizadegan

Can relate to ones above, really need this stuff, it would be extremly usefull function

piams avatar Apr 20 '21 16:04 piams

Just chiming in to agree with the others! I perform GSEA using other packages frequently, and it would be nice to use the plotting features in enrichplot with data frames and not only gseaResult objects. I also agree that it would increase usability of the package quite a bit.

amanda-hi avatar May 14 '21 18:05 amanda-hi