enrichplot

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gene clustering by heatplot

1

Dear YuLab team, First, I appreciate all your effort creating this wonderful R package for the scientific comunity. I run many data with this package and am trying to clusterize...

gabrieljmarques

I obtained an error when launch some of your plots because of usage of **ggnewscale** methods. This package is not included as dependency and is not being installed automatically.

fmjabato

enable sorting in the dotplot y-axis

1

The y-axis in dotplot may be KEGG pathway, GO term or something like that. Currently, the order of these terms are basically sorted by alphabeta of term names, and this...

gaospecial

Hello, I have a problem and that is because ClusterProfiler requires ordering fold change values from highest to lowest at the start, when creating the top pathways using enrichplot/cnetplot, only...

NeginValizadegan

Dear YuLab team, I am trying to change default colour scale palette in heatplot to draw it by cowplot::plot_grid by I cannot find any ggplot solutions to work. Tried scale_color_brewer()...

bartlosz

Adjust text size and location with cnetplot

9

Hi Dr. Yu, Thank you for your packages which made visualization easy and nice! I'm using cnetplot function to visualize the relationship between genes and GO terms. My issue is...

YyLu5

Is it possible to change color of nodes for cnetplot.compareClusterResult

1

Hi Dr Yu, Is it possible to change color of nodes for cnetplot.compareClusterResult and emapplot.compareClusterResult? By default the nodes are colored based on clusters, using ggplot color scheme. For example:...

alexyfyf

Change title font size and add label for X-axis in barplot of enrichResult?

2

Hi YuLab, I am trying to change the font size for the title of the barplot generated by this function but there doesn't seem to be an argument for this,...

JSLJ23

Enrichment maps with custom p-value threshold

2

Hi Guangchuang, thanks for the excellent package! I was wondering if you can enable some more customizability in the enrichment map function, `emapplot`, e.g. to allow considering gene sets that...

federicomarini

Generalize plotting functions to allow use on external results

3

Greetings! Is there any chance you could add an method to apply `enrichPlot` methods to results generated via external tools? clusterProfiler and other packages created by your lab already support...

khughitt